As leader/co-leader
1953–1954: Chico Hamilton Trio (Pacific Jazz, 1955)[10" LP]
1955: Chico Hamilton Quintet featuring Buddy Collette (Pacific Jazz, 1956) – partially live
1955: The Original Chico Hamilton Quintet (World Pacific, 1960) – live
1955: Live at the Strollers (Fresh Sound, 2008) – live
1954, 1956: Chico Hamilton Quintet in Hi Fi (Pacific Jazz, 1956)
1953–1956: Chico Hamilton Trio (Pacific Jazz, 1956) – reissue of LP-17 plus 4 additional tracks
1956: Chico Hamilton Quintet (Pacific Jazz, 1957) – live
1957?: Sweet Smell of Success (Decca, 1957) – film soundtrack
1957?: Delightfully Modern (Jazztone, 1957) – split album with the Laurindo Almeida Quartet; Pacific Jazz material
1958: South Pacific in Hi-Fi (World Pacific, 1958)
1958: Chico Hamilton Trio Introducing Freddie Gambrell (World Pacific, 1958)
1958: The Original Ellington Suite (Pacific Jazz, 2000)
1958: The Chico Hamilton Quintet with Strings Attached (Warner Bros., 1959)
1958: Gongs East! (Warner Bros., 1959)
1954–1959: The Complete Pacific Jazz Recordings of the Chico Hamilton Quintet (Mosaic, 1997) [9LP/6CD box set]
1959: Ellington Suite (World Pacific, 1959)
1959: The Three Faces of Chico (Warner Bros., 1959)
1959: That Hamilton Man (Sesac, 1959)
1960: Bye Bye Birdie-Irma La Douce (Columbia, 1961)
1960 The Chico Hamilton Special (Columbia, 1961)
1962: Drumfusion (Columbia, 1962)
1962: Passin' Thru (Impulse!, 1963)
1962: Transfusion (Studio West/V.S.O.P., 1990)
1963: A Different Journey (Reprise, 1963)
1963: Man from Two Worlds (Impulse!, 1964)
1965: Chic Chic Chico (Impulse!, 1965)
1965: El Chico (Impulse!, 1966)
1966: The Further Adventures of El Chico (Impulse!, 1966)
1966: The Dealer (Impulse!, 1966)
1968: The Gamut (Solid State, 1968)
1968: The Head Hunters (Solid State, 1969)
1970: El Exigente: The Demanding One (Flying Dutchman/RCA, 1970)
1973: The Master (Enterprise/Stax, 1974)
1973: Montreux Festival (Stax, 1974) – live album shared with Albert King and Little Milton
1975: Peregrinations (Blue Note, 1975)
1976: Chico Hamilton and the Players (Blue Note, 1976)
1977?: Catwalk (Mercury, 1977)
1979: Reaching for the Top (Nautilus, 1980)
1980: Nomad (Elektra, 1980)
1988: Euphoria (Swallow, 1989)
1989: The Original Chico Hamilton Quintet: Reunion (Soul Note, 1991)
1990: Arroyo with Euphoria (Soul Note, 1991)
1992: Trio! (Soul Note, 1993)
1992: My Panamanian Friend (The Music of Eric Dolphy) (Soul Note, 1994)
1993: Dreams Come True with Andrew Hill (Joyous Shout!, 2008)
1993: Dancing to a Different Drummer (Soul Note, 1994)
1994: Live @ Artpark (Joyous Shout!, 2008) – live
1999: Timely (All Points Jazz, 1999)
2000–2001: Foreststorn (Koch, 2001)
2002: Thoughts of... (Koch, 2002)
2002–2005: Juniflip (Joyous Shout!, 2006)
2005: Believe (Joyous Shout!, 2006)
2005–2006: 6th Avenue Romp (Joyous Shout!, 2006)
2005: Heritage (Joyous Shout!, 2006)
2007: The Alternative Dimensions of El Chico (Joyous Shout!, 2007)
2007: It's About Time (Joyous Shout!, 2008)
2008: Twelve Tones of Love (Joyous Shout!, 2009)
2011?: Euphoric (Joyous Shout!, 2011)
2011: Revelation (Joyous Shout!, 2011)
2013: The Inquiring Mind (Joyous Shout!, 2014) – posthumous release