2013 crisis, arrest, and trials
In July 2013, Egyptian president Mohammed Morsi, a member of the Muslim Brotherhood, was removed by a coup d'état after the June protests. A travel ban was put on Badie as well as Badie's deputy Khairat el-Shater. Badie's arrest was ordered on 10 July 2013 for "inciting the violence in Cairo on Monday in which more than 50 people were killed." On 14 July 2013 Egypt's military-installed prosecutor general Hisham Barakat ordered his assets to be frozen. Badie was arrested on 20 August 2013. His two deputies were also arrested and he was due to stand trial on 25 August. After the arrest of Badie, the Muslim Brotherhood appointed Mahmoud Ezzat as the acting guide.
Badie then has been tried in the following cases:
Together with eighteen other defendants, he has been accused at Cairo Criminal Court of inciting the murder of nine protesters who stormed the Brotherhood's Cairo headquarters on 30 June. On 29 October 2013, a three-judge panel stepped down from the proceedings, citing "uneasiness" over the trial as trial proceedings were disrupted by named defendants. On 11 December 2013, a second panel of judges withdrew from the trial.
On 7 June 2014, 47 defendants (ten of them in absentia) including Badie were tried at the Criminal Court of Shubra el-Kheima for inciting murder and violence, cutting off roads, threatening public order, and resisting authorities, especially referring to a demonstration in the town of Qalyub in July 2013 (notably blocking a highway), in the course of which at least two people were killed. Along with nine others, Badie was sentenced to death, while there was no sentence yet for additional 37 defendants in the case. On 5 July 2014 ten of them were sentenced to death by the Banha Criminal Court, the remaining including Badie to life in prison.
On 15 July 2013, five persons died in clashes in Giza, notably in the Al-Bahr Al-Azam area near a police building. On 8 September 2013, Egypt's prosecutor-general referred Badie and 14 others to the criminal court, accusing them of being responsible for the incidents. Several trial sessions were reported in the news, until on 19 June 2014, Giza Criminal Court sentenced Badie, Muslim Brotherhood senior members Mohamed Beltagy and Essam el-Erian, as well as 11 others to death for inciting violence.
In an eight-minute trial without an opportunity for a defense on 28 April 2014, Badie and 682 others were found guilty and sentenced to die by judge Said Youssef in a court in Minya, referring to an attack on a police station in the Minya Governorate on 14 August 2013 when 11 policemen and 2 civilians were killed. The same judge confirmed the death sentence on 21 June 2014 in 183 cases, including Badie's. Two months later, Egypt's Grand Mufti commuted the death sentence to a life sentence for Badie and five others. Egyptian law requires any capital sentence to be referred to the Grand Mufti, the highest Islamist religious authority, for an opinion before any execution can take place.
In a 2015 trial, a Cairo court sentenced Badie and 18 other prominent Brotherhood figures to life in prison over an attack on a police station in 2013. Charges ranged from murder and inciting violence to stealing weapons and destruction of public and private property. The court also handed the same sentence to 76 others in absentia.
On 30 May 2016, an Egyptian court also sentenced Badie and 35 other people to life imprisonment for inciting violence in the Suez Canal city of Ismailia that led to the killing of three people in July 2013.
In 2017, Egypt's Court of Cassation accepted the appeal of Badie and 49 other defendants against the death sentences received for the 2013 police station attacks. The court ordered a retrial for the charges.
Badie returned to court in Giza in 2017 to face charges of "preparing an operations room to confront the state and create chaos in the country following the dismantling of the Rabaa al-Adawiya sit-in" and "planning to burn public property and churches", and he received another life sentence.