Plot
In San Francisco, pharmaceutical chemist Will Rodman tests the viral-based drug ALZ-112 on chimpanzees at the biotechnology company Gen-Sys to find a cure for Alzheimer's disease. ALZ-112 is given to a chimpanzee named Bright Eyes, greatly increasing her intelligence. However, during Will's presentation for the drug, Bright Eyes is forced from her cage, goes on a rampage, and is shot to death. Will's superior Steven Jacobs terminates the project and has the chimpanzees euthanized. However, Will's assistant Robert Franklin reveals that the reason for Bright Eyes' rampage was that she had recently given birth. Will reluctantly takes in the infant chimpanzee, eventually naming him Caesar. Discovering that Caesar has inherited his mother's intelligence through being exposed to ALZ-112, Will decides to raise him. Three years pass, Caesar becomes highly intelligent; he can communicate through sign language. Will begins a romantic relationship with primatologist, Caroline Aranha. Will and Caroline introduce Caesar to the redwood forest at Muir Woods National Monument so he can roam. Meanwhile, Will treats his father, Charles, with ALZ-112, which seems to restore his cognitive ability.
Five years later, Caesar, now entering adulthood, questions his origins and place in the world. Charles's condition returns as his immune system becomes resistant to ALZ-112. Caesar injures an aggressive neighbor, Douglas Hunsiker, while defending a confused Charles. The local animal control subsequently takes him to an ape shelter. Caesar is tormented by the alpha chimpanzee, Rocket, and the chief guard, Dodge Landon. However, Caesar befriends Maurice, a former circus orangutan who also knows sign language. Caesar learns to unlock his cage, gaining free access to the common area. With the assistance of Buck, a gorilla, Caesar claims the position of alpha. Meanwhile, Jacobs clears the development of a more powerful gaseous version of the drug, the ALZ-113, when Will tells him it can improve intelligence. Will takes the drug home for his father, but Charles declines further treatment and dies overnight. After attempting to test the drug on a bonobo named Koba, Franklin accidentally becomes exposed to ALZ-113 and becomes ill. Despite the risks, Jacobs orders continued trials and Will consequently quits his position.
Attempting to warn Will at his home, Franklin sneezes blood onto Hunsiker and is later discovered dead. Will attempts to reclaim Caesar, but Caesar decides to stay. He escapes and steals the ALZ-113 canisters from Will's house and enhances the intelligence of the other apes in the shelter. When Dodge attempts to get him back into his cage, Caesar reveals he can talk; while freeing the apes, he fights with Dodge, whose cattle prod electrocutes him. The apes flee, releasing Koba and the remaining apes from Gen-Sys, and freeing additional apes from the San Francisco Zoo. A battle ensues as the apes fight their way past a police blockade on the Golden Gate Bridge in an attempt to escape into the redwood forest. To save Caesar, Buck sacrifices himself to down a helicopter. Koba pushes the helicopter, with Jacobs still inside, into the sea.
As the apes find their way into the forest, Will finds and warns Caesar that the humans will hunt them, begging him to return home. Caesar hugs him and says he is home. Will accepts Caesar's wishes and the apes embrace their new lifestyle in the forest. Meanwhile, Hunsiker, now infected with ALZ-113, arrives at San Francisco International Airport for his flight. He eventually spreads the virus around the planet, leading to a deadly pandemic.