Post-premiership
In 2000 Mečiar ostensibly gave up his political ambitions. His HZDS colleague Augustín Marián Húska said: "The NATO-War against Yugoslavia in 1999 was also a signal to us, to not pursue any vision of political independence anymore. We have seen what will happen to forces that want to be independent." In 2000, Mečiar was arrested by Slovak police on charges of fraud dating from his term in office.
Mečiar was heavily favored to win the 2002 election, but it was thought that if he became prime minister again, it would end any chance of Slovakia getting into the EU. The 2002 elections saw the HZDS score a high percentage (20%) again. However, as in 1998, no other party was willing to serve under him. The result was another term in government for Dzurinda. The lower percentage of Mečiar's HZDS (20%) compared to the 1998 result (27%) was due to internal disputes within the organization shortly before the election, which caused many traditional HZDS members to leave the party. Some of them created the HZD (Movement for Democracy) party led by Ivan Gašparovič. In 2003, further traditional HZDS members left the party and most of them created the People's Union (Ľudová únia).
In the 2004 presidential election, Mečiar tried to become Slovak president again, but was defeated in the second round by his former, long-standing ally Ivan Gašparovič. In the 2006 parliamentary election in Slovakia, HZDS had the worst election result in its history, just 8.79%. Mečiar requested an examination of the election results. While HZDS became part of Robert Fico's coalition, Mečiar was not a Cabinet member. He declined to participate in the 2009 presidential election but also denied considering political retirement.
In the 2010 parliamentary election, Mečiar's HZDS dropped to 4%, leaving it out of parliament for the first time in its history. In the 2012 elections, the HZDS saw its vote collapse to 0.93%, leaving it again outside of parliament. Eventually, the party was dissolved in 2014.