As leader/co-leader
1952 - Live in Hollywood (Xanadu, 1979)
1955 - Lee Konitz with Warne Marsh (Atlantic) with Lee Konitz
1956 - Jazz of Two Cities (Imperial) also released as The Winds of Marsh (Imperial, 1959)
1956 - Art Pepper with Warne Marsh (Contemporary, 1986)
1957 - The Right Combination (Riverside) with Joe Albany
1957 - Music for Prancing (Mode, 1957)
1957-58 - Warne Marsh (Atlantic)
1959 - The Art of Improvising (Revelation, 1974) - excerpts with only the W. M. solos
1959 - The Art of Improvising Volume 2 (Revelation, 1977) - excerpts with only the W. M. solos
1959-60 - Release Record Send Tape (Wave, 1969)
1960 - Jazz from the East Village (Wave, 1969)
1962 - Live in Las Vegas, 1962 (Naked City Jazz, 2000)
1969 - Ne Plus Ultra (Revelation, 1970) - reissued with the same title by Hat Hut in 2006, and by Endless Happiness in 2023
1972 - Report of the 1st Annual Symposium On Relaxed Improvisation (Revelation, 1972) with Clare Fischer and Gary Foster
1975 - Two not One (4CD) (Storyville, 2017) with Lee Konitz - contains the following five records
Warne Marsh Quintet: Jazz Exchange Vol. 1 (Storyville, 1975 [1976]) with Lee Konit
Live at the Montmartre Club: Jazz Exchange Vol. 2 (Storyville, 1975 [1977]) with Lee Konitz
Warne Marsh Lee Konitz: Jazz Exchange Vol. 3 (Storyville, 1975 [1985]) with Lee Konitz later as Live at Montmartre, Vol. 3 (Storyville, 1995)
The Unissued 1975 Copenhagen Studio Recordings (Storyville, 1975 [1997]) Warne Marsh Quartet
The Unissued 1975 Copenhagen Studio Recordings (Storyville, 1975 [1997]) Warne Marsh trio
Marshlands (Storyville, 1975 [2003]) - anthology of Storyville records
1976 - All Music (Nessa, 1976) reissued by Nessa Records as CD in 2004
1976 - Lee Konitz Meets Warne Marsh Again (Produttori Associati, 1976) Reissued by Pausa Records in 1977, 1978 and 1984
1976 - Tenor Gladness (Discomate, 1976) with Lew Tabackin
1977 - Warne Out (Interplay, 1977)
1977-79 Noteworthy (Discovery, 1988) plus three tracks recordend in 1956
1978 - Apogee (Warner Bros., 1978) with Pete Christlieb
1978 - Conversations with Warne Volume 1 (Criss Cross, 1991) with Pete Christlieb
1978 - Conversations with Warne Volume 2 (Criss Cross Jazz, 1991) with Pete Christlieb
1976/79 - How Deep, How High (Interplay, 1980) with Sal Mosca
1980 - Berlin 1980 (Gambit, 2006)
1980 - I Got a Good One for You (Storyville, 1999) - reissued as In Copenhagen (Storyville, 2007)
1980 - Red Mitchell/Warne Marsh Big Two (Storyville, 1987)
1980 - Red Mitchell-Warne Marsh Big Two, Vol. 2 (Storyville, 1998)
1980 - Duo Live at Sweet Basil 1980 (Fresh Sound, 2004)
1980 - I Remember You... (Spotlite) with Karin Krog and Red Mitchell
1982.08 - Star Highs (Criss Cross Jazz, 1982)
1982.10 - Warne Marsh Meets Gary Foster (East Wind, 1982) with Gary Foster
1982.08 - A Ballad Album (Criss Cross, 1983) with Lou Levy
1983.05 - In Norway_Sax of A Kind (Hot Club Records, 1983)
1985.03 - Posthumous (Interplay, 1989) released with additional tracks as Newly Warne (Storyville, 1989)
1985.12 - Ballad for You (Interplay, 1995) with Susan Chen
1986.01 - Warne Marsh & Susan Chen (Interplay, 1987) with Susan Chen
1986.03 - Back Home (Criss Cross, 1986)
1987.06 - Two Days in the Life of... (Interplay, 1987) reissued by Storyville in 1989 and by AbsordMusic in 2010
1987.09 - For the Time Being (Hot Club, 1988)
1987.10 - Final Interplay (JAZZBANK/Five Spot, 2004)
1987.12 - Personnel Statement (JAZZBANK/Archives, 2002)