2023–24: Senior season
Entering her senior season, Clark was named preseason Big Ten Player of the Year and earned unanimous AP preseason All-American honors. On October 15, 2023, she played in Crossover at Kinnick, a preseason exhibition game against DePaul at Kinnick Stadium, and had a triple-double of 34 points, 11 rebounds and 10 assists in a 94–72 win. The game had an attendance of 55,646, which set the women's basketball record. In her second regular season game, on November 9, Clark posted 44 points, eight rebounds and six assists in an 80–76 win over AP No. 8 Virginia Tech. In Iowa's third game, a 94–53 blowout of Northern Iowa on November 12, Clark recorded her 12th career triple-double, with 24 points, 11 assists and 10 rebounds. She became Iowa's all-time leading scorer, passing Megan Gustafson, and became only the second player in Division I history with a triple-double in four different seasons, joining Ionescu. One week later, she recorded 35 points, 10 assists, six rebounds and seven steals in a 113–90 win over Drake, passing Kelsey Plum of Washington for the most 30-point games in women's Division I history.
On December 6, 2023, Clark became the 15th Division I player to reach 3,000 career points and was the second-fastest to reach the mark, posting 35 points, nine rebounds and five assists in a 67–58 victory over Iowa State. On December 16, she scored 38 points and made nine three-pointers in a 104–75 win over Cleveland State. Three days later, she shared Sporting News Athlete of the Year honors with Angel Reese. Later that week, Clark was announced as the runner-up to gymnast Simone Biles for the AP Female Athlete of the Year award. On December 21, in Iowa's final non-conference game, she recorded a triple-double of 35 points, 17 rebounds, and 10 assists in the Hawkeyes' 98–69 win over Loyola Chicago. In her next game, on December 30, Clark posted 35 points and 10 assists in a 94–71 victory against Minnesota, surpassing Samantha Prahalis of Ohio State to become the Big Ten's all-time leader in assists. During the game, she also eclipsed Samantha Logic's mark for the program record in the same category. On January 2, 2024, Clark scored 40 points and made a long, game-winning three-pointer as time expired in a 76–73 win over Michigan State. Three days later, she posted 29 points, 10 rebounds and 10 assists in a 103–69 win over Rutgers. On January 8, Clark was named Big Ten Player of the Week for the 24th time in her career, breaking the conference record held by Gustafson. In her following game, she registered her second consecutive triple-double, with 26 points, 10 rebounds and 10 assists in a 96–71 victory against Purdue. On January 21, Clark recorded 45 points and seven assists in a 100–92 overtime loss to AP No. 18 Ohio State. After the game, as Ohio State fans were rushing the court, she was knocked down in a collision with a fan but did not suffer an injury, despite initially appearing to be in pain.
On January 31, 2024, Clark posted 35 points and 10 assists in a 110–74 win over Northwestern, breaking the Big Ten all-time scoring record held by Kelsey Mitchell of Ohio State. In February, Fox began devoting a camera, called the "Caitlin Cam", to record Clark during its broadcasts of Iowa games and to stream on TikTok. She became the sixth Division I women's player with 1,000 career assists during the Hawkeyes' 82–79 loss at Nebraska on February 11, where she tallied 31 points, 10 assists and eight rebounds. On February 15, Clark became the NCAA Division I women's career scoring leader, surpassing Kelsey Plum, during a 106–89 win over Michigan. She finished the game with a career-high 49 points, 13 assists and five rebounds, eclipsing Gustafson for the program single-game scoring record. Between her points and assists, Clark was responsible for 79 of her team's points, the most by any Division I women's player in at least 25 seasons. On February 28, Clark passed Lynette Woodard, who played for Kansas in the era when the Association of Intercollegiate Athletics for Women governed women's college sports, to become the all-time leader in points among major women's college players. During the game, she posted her second straight triple-double, with 33 points, 12 assists and 10 rebounds, leading the Hawkeyes to a 108–60 win over Minnesota. She also set the Big Ten career record for three-pointers, surpassing Kelsey Mitchell, and the NCAA single-season record in the same category, previously held by Taylor Pierce of Idaho. In her final regular season game, on March 3, Clark became the NCAA Division I all-time leading scorer among men's or women's players, eclipsing Pete Maravich, who had set the men's scoring record in three seasons with LSU. She tallied 35 points, nine assists and six rebounds in a 93–83 win over AP No. 2 Ohio State. She finished the regular season as the unanimous Big Ten Player of the Year and earned first-team All-Big Ten honors from the league's coaches and media.
During the Hawkeyes' quarterfinal win over Penn State at the 2024 Big Ten tournament, Clark surpassed Stephen Curry of Davidson and Darius McGhee of Liberty for the most three-pointers in a single season by any Division I player regardless of gender. In a semifinal win over Michigan, she became the first Division I women's player to score at least 1,000 points in two different seasons and passed Mitchell as the career leading scorer in the Big Ten tournament. Clark led Iowa to its third straight Big Ten tournament title and was named MOP after recording 34 points, 12 assists and seven rebounds in a 94–89 overtime win over Nebraska in the final. In the second round of the NCAA tournament, Clark scored 32 points and surpassed Kelsey Plum for the most points in a single season in Division I women's history, leading Iowa to a 64–54 win over West Virginia. The Elite Eight saw a rematch of the 2023 national championship game against LSU, where Clark had 41 points, 12 assists and seven rebounds in a 94–87 victory, leading the Hawkeyes to their second straight Final Four and a school-record 33 wins and being named Albany 2 Regional MOP. Her nine three-pointers tied the most by a player in an NCAA tournament game. She surpassed Taylor Robertson's record of 537, set in five seasons at Oklahoma, to become the all-time Division I leader in three-pointers. Clark also broke NCAA tournament career marks in assists and three-pointers, held by Temeka Johnson of LSU and Diana Taurasi of UConn, respectively. In the Final Four, she posted 21 points, nine rebounds and seven assists in a 71–69 win over UConn, as Iowa reached the national championship game for a second consecutive season. Clark had 30 points, eight rebounds and five assists in an 87–75 loss to South Carolina, the number one overall seed, in the title game. She scored 18 points in the first quarter, the most by a player in a single period in championship game history. She also surpassed Chamique Holdsclaw of Tennessee for the NCAA tournament career scoring record.
Clark was named national player of the year for her second straight season, receiving AP Player of the Year, the Honda Sports Award, the John R. Wooden Award, Naismith College Player of the Year, USBWA National Player of the Year and the Wade Trophy. For a third time, she won the Nancy Lieberman Award as the top Division I point guard and was named a unanimous first-team All-American. At the end of her senior year, Clark again was named the CSC's Division I Academic All-American of the Year in both women's basketball and all sports, completing her college career with a 3.64 GPA. In her senior season, Clark averaged 31.6 points, 8.9 assists and 7.4 rebounds per game, leading Division I in scoring and assists. She finished with the highest career scoring average (28.42) in Division I history, passing Patricia Hoskins of Mississippi Valley State. Clark left Iowa with the most career points (3,951) and three-pointers (548), the second-most triple-doubles (17) and the third-most assists (1,144) in Division I history. For a second straight season, Clark won the Honda Cup and the James E. Sullivan Award, becoming the first two-time winner in the Sullivan Award's 94-year history. She also became the third athlete to repeat as Big Ten Female Athlete of the Year. In June 2024, Clark was nominated for three ESPY Awards. At the 2024 ESPY Awards held on July 11, 2024, Clark won the Best Female College Athlete ESPY Award for a second time, became the first female athlete to win the Best Record-Breaking Performance ESPY Award, but lost out on the Best Female Athlete ESPY Award to two-time WNBA MVP and two-time WNBA champion, A'ja Wilson.
On February 29, 2024, Clark announced that she would declare for the 2024 WNBA draft, forgoing her fifth season of eligibility, which was granted to all players during the 2020–21 season due to the COVID-19 pandemic. She was projected to be the first overall pick in the 2024 WNBA draft by many publications, including ESPN, USA Today and CBS Sports.
Following the conclusion of Clark's senior season, it was announced that Iowa would retire her jersey number, making her the third player in program history to receive the honor. On February 2, 2025, following the Hawkeyes' win over No. 4 USC, Clark's No. 22 jersey was retired by the University of Iowa. In October 2025, the Associated Press selected Clark as one of the greatest collegiate players in the women’s poll era alongside Cheryl Miller, Diana Taurasi, Candace Parker, and Breanna Stewart as the starting five players.